Through games of Dec. 3, 2006:
| # | Team | W-L | Pts. | Last Week |
| 1 | Bowdoin (15) | 6-0 | 614 | 1 |
| 2 | Hope (8) | 5-0 | 596 | 2 |
| 3 | Rochester (2) | 6-0 | 555 | 4 |
| 4 | Scranton | 4-1 | 531 | 5 |
| 5 | DePauw | 5-1 | 485 | 7 |
| 6 | Southern Maine | 4-1 | 454 | 3 |
| 7 | Brandeis | 6-0 | 441 | 8 |
| 8 | Baldwin-Wallace | 4-1 | 382 | 10 |
| 9 | Hardin-Simmons | 5-1 | 378 | 11 |
| 10 | UW-Stout | 6-1 | 365 | 6 |
| 11 | Mary Washington | 4-1 | 348 | 12 |
| 12 | Howard Payne | 4-0 | 321 | 14 |
| 13 | Messiah | 4-1 | 317 | 13 |
| 14 | McMurry | 5-0 | 311 | 15 |
| 15 | Calvin | 4-1 | 253 | 9 |
| 16 | Wilmington | 5-0 | 216 | 23 |
| 17 | Simpson | 5-0 | 212 | 20 |
| 18 | Salem State | 5-0 | 199 | 19 |
| 19 | Bridgewater (Va.) | 3-0 | 180 | 21 |
| 20 | UW-Stevens Point | 6-1 | 156 | 16 |
| 21 | Chicago | 5-0 | 130 | 25 |
| 22 | Lake Forest | 5-1 | 109 | 18 |
| 23 | Maryville (Tenn.) | 6-0 | 82 | 24 |
| 24 | Illinois Wesleyan | 5-0 | 77 | — |
| 25 | Pacific Lutheran | 4-2 | 66 | — |
Dropped out: No. 22 Randolph-Macon, No. 17 Puget Sound
Others receiving votes: Puget Sound 60, Medaille 57, UW-River Falls 42, New York University 40, Wheaton (Ill.) 35, Muhlenberg 24, Emmanuel 22, UW-Eau Claire 16, Norwich 11, UW-La Crosse 10, Washington U. 10, Randolph-Macon 9, Williams 5, Bates 3, Hendrix 2, Virginia Wesleyan 1.
The D3hoops.com Top 25 is voted on by a panel of 25 coaches, Sports Information Directors and media members from across the country, and is published weekly.