Through games of Feb. 1, 2009:
| # | Team | W-L | Pts. | Last Week |
| 1 | St. Thomas (18) | 19-0 | 618 | 1 |
| 2 | Washington U. (7) | 17-1 | 607 | 2 |
| 3 | UW-Stevens Point | 17-2 | 569 | 3 |
| 4 | UW-Platteville | 18-2 | 546 | 4 |
| 5 | UW-Whitewater | 17-3 | 496 | 6 |
| 6 | Puget Sound | 17-2 | 463 | 9 |
| 7 | Buena Vista | 18-2 | 420 | 10 |
| 8 | Capital | 17-2 | 412 | 5 |
| 9 | Ithaca | 17-1 | 396 | 11 |
| 10 | Richard Stockton | 19-2 | 363 | 12 |
| 11 | St. Norbert | 16-1 | 361 | 14 |
| 12 | Trinity (Texas) | 17-2 | 357 | 8 |
| 13 | Elms | 17-1 | 350 | 13 |
| 14 | Wheaton (Ill.) | 16-3 | 335 | 7 |
| 15 | Elmhurst | 15-4 | 288 | 17 |
| 16 | Middlebury | 18-2 | 232 | 19 |
| 17 | Mass-Dartmouth | 17-2 | 225 | 18 |
| 18 | Augustana | 15-5 | 208 | 15 |
| 19 | Texas-Dallas | 17-2 | 167 | 22 |
| 20 | Amherst | 16-3 | 165 | 16 |
| 21 | Franklin and Marshall | 17-2 | 109 | — |
| 22 | Worcester Polytech | 16-3 | 79 | — |
| 23 | Carnegie Mellon | 14-4 | 57 | 20 |
| 24 | John Carroll | 14-4 | 56 | — |
| 25 | DePauw | 15-5 | 43 | — |
Dropped out: No. 21 St. John Fisher, No. 23 Centre, No. 24 Carroll, No. 25 Gettysburg.
Others receiving votes: Centre 41, Rhode Island College 34, Guilford 27, William Paterson 24, Whitworth 22, Roanoke 14, Transylvania 13, Anderson 9, St. John Fisher 9, Randolph-Macon 3, DeSales 2, Hope 2, Chapman 1, Rochester Tech 1, Salem State 1.
The D3hoops.com Top 25 is voted on by a panel of 25 coaches, Sports Information Directors and media members from across the country, and is published weekly.